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- GitHub - BenCree/Protein-ligand-openmm-workflow: Workflow for an MD simulation of a protein ...
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- GitHub - athar91/amber_protein_ligand_simulation: Protein-Ligand MD Simulation using AMBER
- Restarining distance between protein center and ligand center in a complex · Issue #3765 ...
- Simulation drags protein/ligand outside of the waterbox · Issue #3452 · openmm/openmm · GitHub
- Creating independent replica simulations · Issue #3843 · openmm/openmm · GitHub
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- Rigidifying a large protein · Issue #3454 · openmm/openmm · GitHub
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